Uses of Class
edu.columbia.cs.ref.model.core.structure.OperableStructure

Packages that use OperableStructure

edu.columbia.cs.cg.prdualrank
edu.columbia.cs.ref.algorithm
edu.columbia.cs.ref.algorithm.evaluation
edu.columbia.cs.ref.algorithm.evaluation.measure
edu.columbia.cs.ref.algorithm.evaluation.measure.impl
edu.columbia.cs.ref.algorithm.feature.generation
edu.columbia.cs.ref.engine
edu.columbia.cs.ref.engine.impl
edu.columbia.cs.ref.engine.impl.resources
edu.columbia.cs.ref.model
edu.columbia.cs.ref.model.core
edu.columbia.cs.ref.model.core.impl
edu.columbia.cs.ref.model.core.structure.impl
edu.columbia.cs.ref.model.feature
edu.columbia.cs.ref.model.feature.impl
edu.columbia.cs.ref.model.re
edu.columbia.cs.ref.model.re.impl
edu.columbia.cs.ref.tool.io

Uses of OperableStructure in edu.columbia.cs.cg.prdualrank

Method parameters in edu.columbia.cs.cg.prdualrank with type arguments of type OperableStructure

Model

PRDualRank.train(java.util.List<OperableStructure> list)

Uses of OperableStructure in edu.columbia.cs.ref.algorithm

Methods in edu.columbia.cs.ref.algorithm that return types with arguments of type OperableStructure

static java.util.Set<OperableStructure>

StructureGenerator.generateStructures(java.util.Set<CandidateSentence> candidates, StructureConfiguration config) Generate all the operable structures from a given set of candidate sentences with regard for a given configuration file.

Uses of OperableStructure in edu.columbia.cs.ref.algorithm.evaluation

Method parameters in edu.columbia.cs.ref.algorithm.evaluation with type arguments of type OperableStructure

void	Evaluator.printEvaluationReport(java.util.List<OperableStructure> testingFiles, Model m) Prints the evaluation report.

Uses of OperableStructure in edu.columbia.cs.ref.algorithm.evaluation.measure

Method parameters in edu.columbia.cs.ref.algorithm.evaluation.measure with type arguments of type OperableStructure

double	Measure.getValue(java.util.Map<OperableStructure,java.util.Set<java.lang.String>> labels, java.util.Map<OperableStructure,java.util.Map<Model.PredictionProperties,java.lang.Object>> properties) Obtains the value of the metric
double	Measure.getValue(java.util.Map<OperableStructure,java.util.Set<java.lang.String>> labels, java.util.Map<OperableStructure,java.util.Map<Model.PredictionProperties,java.lang.Object>> properties) Obtains the value of the metric

Uses of OperableStructure in edu.columbia.cs.ref.algorithm.evaluation.measure.impl

Method parameters in edu.columbia.cs.ref.algorithm.evaluation.measure.impl with type arguments of type OperableStructure

double	Recall.getValue(java.util.Map<OperableStructure,java.util.Set<java.lang.String>> labels, java.util.Map<OperableStructure,java.util.Map<Model.PredictionProperties,java.lang.Object>> properties)
double	Recall.getValue(java.util.Map<OperableStructure,java.util.Set<java.lang.String>> labels, java.util.Map<OperableStructure,java.util.Map<Model.PredictionProperties,java.lang.Object>> properties)
double	FMeasure.getValue(java.util.Map<OperableStructure,java.util.Set<java.lang.String>> labels, java.util.Map<OperableStructure,java.util.Map<Model.PredictionProperties,java.lang.Object>> properties)
double	FMeasure.getValue(java.util.Map<OperableStructure,java.util.Set<java.lang.String>> labels, java.util.Map<OperableStructure,java.util.Map<Model.PredictionProperties,java.lang.Object>> properties)
double	Precision.getValue(java.util.Map<OperableStructure,java.util.Set<java.lang.String>> labels, java.util.Map<OperableStructure,java.util.Map<Model.PredictionProperties,java.lang.Object>> properties)
double	Precision.getValue(java.util.Map<OperableStructure,java.util.Set<java.lang.String>> labels, java.util.Map<OperableStructure,java.util.Map<Model.PredictionProperties,java.lang.Object>> properties)
double	NumberOfTruePositives.getValue(java.util.Map<OperableStructure,java.util.Set<java.lang.String>> labels, java.util.Map<OperableStructure,java.util.Map<Model.PredictionProperties,java.lang.Object>> properties)
double	NumberOfTruePositives.getValue(java.util.Map<OperableStructure,java.util.Set<java.lang.String>> labels, java.util.Map<OperableStructure,java.util.Map<Model.PredictionProperties,java.lang.Object>> properties)
double	NumberOfExpectedPositiveAnswers.getValue(java.util.Map<OperableStructure,java.util.Set<java.lang.String>> labels, java.util.Map<OperableStructure,java.util.Map<Model.PredictionProperties,java.lang.Object>> properties)
double	NumberOfExpectedPositiveAnswers.getValue(java.util.Map<OperableStructure,java.util.Set<java.lang.String>> labels, java.util.Map<OperableStructure,java.util.Map<Model.PredictionProperties,java.lang.Object>> properties)
double	NumberOfPositiveAnswers.getValue(java.util.Map<OperableStructure,java.util.Set<java.lang.String>> labels, java.util.Map<OperableStructure,java.util.Map<Model.PredictionProperties,java.lang.Object>> properties)
double	NumberOfPositiveAnswers.getValue(java.util.Map<OperableStructure,java.util.Set<java.lang.String>> labels, java.util.Map<OperableStructure,java.util.Map<Model.PredictionProperties,java.lang.Object>> properties)

Uses of OperableStructure in edu.columbia.cs.ref.algorithm.feature.generation

Methods in edu.columbia.cs.ref.algorithm.feature.generation with parameters of type OperableStructure

void	FeatureGenerator.generateFeatures(OperableStructure s) Method to produce the features into an Operable structure

Uses of OperableStructure in edu.columbia.cs.ref.engine

Method parameters in edu.columbia.cs.ref.engine with type arguments of type OperableStructure

Model

Engine.train(java.util.List<OperableStructure> list) Given a list of labeled operable structures that corresponds to the training data, produces a model for relationship extraction.

Uses of OperableStructure in edu.columbia.cs.ref.engine.impl

Method parameters in edu.columbia.cs.ref.engine.impl with type arguments of type OperableStructure

Model	JLibSVMMulticlassEngine.train(java.util.List<OperableStructure> train)
Model	WekaClassifierEngine.train(java.util.List<OperableStructure> list)
Model	JLibSVMBinaryEngine.train(java.util.List<OperableStructure> train)

Uses of OperableStructure in edu.columbia.cs.ref.engine.impl.resources

Methods in edu.columbia.cs.ref.engine.impl.resources that return types with arguments of type OperableStructure

static edu.berkeley.compbio.jlibsvm.multi.MultiClassProblemImpl<java.lang.String,OperableStructure>	OperableStructureToMulticlassSVMproblemConverter.convert(java.util.List<OperableStructure> train)
static edu.berkeley.compbio.jlibsvm.binary.BinaryClassificationProblemImpl<java.lang.String,OperableStructure>	OperableStructureToBinarySVMproblemConverter.convert(java.util.List<OperableStructure> train, RelationshipType relLabel)

Method parameters in edu.columbia.cs.ref.engine.impl.resources with type arguments of type OperableStructure

static edu.berkeley.compbio.jlibsvm.multi.MultiClassProblemImpl<java.lang.String,OperableStructure>	OperableStructureToMulticlassSVMproblemConverter.convert(java.util.List<OperableStructure> train)
static edu.berkeley.compbio.jlibsvm.binary.BinaryClassificationProblemImpl<java.lang.String,OperableStructure>	OperableStructureToBinarySVMproblemConverter.convert(java.util.List<OperableStructure> train, RelationshipType relLabel)

Uses of OperableStructure in edu.columbia.cs.ref.model

Methods in edu.columbia.cs.ref.model that return OperableStructure

OperableStructure

StructureConfiguration.getOperableStructure(CandidateSentence sent) Gets the operable structure.

Uses of OperableStructure in edu.columbia.cs.ref.model.core

Methods in edu.columbia.cs.ref.model.core that return OperableStructure

OperableStructure

Core.getStructure(CandidateSentence sent)

Uses of OperableStructure in edu.columbia.cs.ref.model.core.impl

Fields in edu.columbia.cs.ref.model.core.impl with type parameters of type OperableStructure

static java.util.Map<OperableStructure,java.util.Map<OperableStructure,java.lang.Double>>	DependencyGraphsKernel.dynamic
static java.util.Map<OperableStructure,java.util.Map<OperableStructure,java.lang.Double>>	DependencyGraphsKernel.dynamic

Methods in edu.columbia.cs.ref.model.core.impl that return OperableStructure

OperableStructure	BagOfNGramsKernel.createOperableStructure(CandidateSentence sent)
OperableStructure	DependencyGraphsKernel.createOperableStructure(CandidateSentence sent)
OperableStructure	SubsequencesKernel.createOperableStructure(CandidateSentence sent)
OperableStructure	ShortestPathKernel.createOperableStructure(CandidateSentence sent)

Methods in edu.columbia.cs.ref.model.core.impl with parameters of type OperableStructure

double	BagOfNGramsKernel.evaluate(OperableStructure s1, OperableStructure s2)
double	DependencyGraphsKernel.evaluate(OperableStructure s1, OperableStructure s2)
double	SubsequencesKernel.evaluate(OperableStructure s1, OperableStructure s2)
double	ShortestPathKernel.evaluate(OperableStructure s1, OperableStructure s2)

Uses of OperableStructure in edu.columbia.cs.ref.model.core.structure.impl

Subclasses of OperableStructure in edu.columbia.cs.ref.model.core.structure.impl

class	OpenInformationExtractionOS
class	RelationOperableStructure
class	TaggedBagOfNgrams
class	TaggedGraph
class	TaggedSequence

Uses of OperableStructure in edu.columbia.cs.ref.model.feature

Methods in edu.columbia.cs.ref.model.feature with parameters of type OperableStructure

abstract void

FeatureSet.enrichMe(OperableStructure operableStructure)

Uses of OperableStructure in edu.columbia.cs.ref.model.feature.impl

Methods in edu.columbia.cs.ref.model.feature.impl with parameters of type OperableStructure

void	SequenceFS.enrichMe(OperableStructure operableStructure)
void	GraphFS.enrichMe(OperableStructure operableStructure)
void	WekaInstanceFS.enrichMe(OperableStructure operableStructure)

Uses of OperableStructure in edu.columbia.cs.ref.model.re

Methods in edu.columbia.cs.ref.model.re with parameters of type OperableStructure

java.util.Map<Model.PredictionProperties,java.lang.Object>	Model.obtainPredictionPropertyValue(OperableStructure s)
java.util.Set<java.lang.String>	Model.predictLabel(OperableStructure s)

Uses of OperableStructure in edu.columbia.cs.ref.model.re.impl

Methods in edu.columbia.cs.ref.model.re.impl that return OperableStructure

OperableStructure[]

JLibsvmModelInformation.getSupportVectors()

Methods in edu.columbia.cs.ref.model.re.impl that return types with arguments of type OperableStructure

edu.berkeley.compbio.jlibsvm.kernel.KernelFunction<OperableStructure>

JLibsvmModelInformation.getKernel()

Methods in edu.columbia.cs.ref.model.re.impl with parameters of type OperableStructure

java.util.Set<java.lang.String>	JLibsvmCompositeBinaryModel.getPredictedLabel(OperableStructure s)
java.util.Set<java.lang.String>	JLibsvmBinaryModel.getPredictedLabel(OperableStructure s)
void	JLibsvmModelInformation.setSupportVectors(OperableStructure[] supportVectors)

Method parameters in edu.columbia.cs.ref.model.re.impl with type arguments of type OperableStructure

void	JLibsvmModelInformation.setKernel(edu.berkeley.compbio.jlibsvm.kernel.KernelFunction<OperableStructure> kernel)

Constructors in edu.columbia.cs.ref.model.re.impl with parameters of type OperableStructure

JLibsvmModelInformation(int numSV, OperableStructure[] supportVectors, double[] alpha, float rho, edu.berkeley.compbio.jlibsvm.kernel.KernelFunction<OperableStructure> kernel, java.lang.String trueLabel, java.lang.String falseLabel)

Constructor parameters in edu.columbia.cs.ref.model.re.impl with type arguments of type OperableStructure

JLibsvmBinaryModel(edu.berkeley.compbio.jlibsvm.binary.BinaryModel<java.lang.String,OperableStructure> binary, StructureConfiguration conf, java.util.Set<RelationshipType> relationshipType)

JLibsvmModelInformation(int numSV, OperableStructure[] supportVectors, double[] alpha, float rho, edu.berkeley.compbio.jlibsvm.kernel.KernelFunction<OperableStructure> kernel, java.lang.String trueLabel, java.lang.String falseLabel)

JLibsvmMulticlassModelModel(edu.berkeley.compbio.jlibsvm.multi.MultiClassModel<java.lang.String,OperableStructure> model, StructureConfiguration conf, java.util.Set<RelationshipType> relationshipTypes)

Uses of OperableStructure in edu.columbia.cs.ref.tool.io

Methods in edu.columbia.cs.ref.tool.io that return types with arguments of type OperableStructure

static java.util.Set<OperableStructure>

CoreReader.readOperableStructures(java.lang.String output)

Method parameters in edu.columbia.cs.ref.tool.io with type arguments of type OperableStructure

static void

CoreWriter.writeOperableStructures(java.util.Set<OperableStructure> candidates, java.lang.String output)