edu.columbia.cs.ref.model.core.impl
Class SubsequencesKernel

java.lang.Object
  edu.columbia.cs.ref.model.core.Core
      edu.columbia.cs.ref.model.core.Kernel
          edu.columbia.cs.ref.model.core.impl.SubsequencesKernel

All Implemented Interfaces:

edu.berkeley.compbio.jlibsvm.kernel.KernelFunction<OperableStructure>, java.io.Serializable

public class SubsequencesKernel
extends Kernel

See Also:

Serialized Form

Constructor Summary

SubsequencesKernel()

SubsequencesKernel(int nFore, int nIntra, int nAfter, double lambda, boolean bCache, boolean bNorm)

Method Summary

OperableStructure	createOperableStructure(CandidateSentence sent)
double	evaluate(OperableStructure s1, OperableStructure s2)
double	kernel(TaggedSequence s1, TaggedSequence s2)
double	normKernel(TaggedSequence s1, TaggedSequence s2)
double	selfKernel(TaggedSequence s)

Methods inherited from class edu.columbia.cs.ref.model.core.Core

getMandatoryFeatureGenerators, getStructure

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SubsequencesKernel

public SubsequencesKernel(int nFore,
                          int nIntra,
                          int nAfter,
                          double lambda,
                          boolean bCache,
                          boolean bNorm)

SubsequencesKernel

public SubsequencesKernel()

Method Detail

createOperableStructure

public OperableStructure createOperableStructure(CandidateSentence sent)

normKernel

public double normKernel(TaggedSequence s1,
                         TaggedSequence s2)

selfKernel

public double selfKernel(TaggedSequence s)

kernel

public double kernel(TaggedSequence s1,
                     TaggedSequence s2)

evaluate

public double evaluate(OperableStructure s1,
                       OperableStructure s2)